Maybe create a new version for nautilus in snapcraft to take care of the update?

you can go to the “register snap” page of your user account on … it will tell you the package name is already taken and offer you a “dispute” button or link, where you can ask to take over the name then …

note though that this would have to be a classic snap and

does not actually have a category for file managers, neither in the supported nor in the unsupported list, i personally doubt you will get classic granted for this (though i’m not a reviewer)

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Thanks for the answer, I’ll try something. I’m honestly new to Snapcraft.